Glyma18g39570 - SoyBase

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Report for Sequence Feature Glyma18g39570

Feature Type:	gene_model
Chromosome:	Gm18
Start:	47615652
stop:	47626020
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g39570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G09410	AT	Annotation by Michelle Graham. TAIR10: Pectinacetylesterase family protein \| chr3:2898243-2900984 REVERSE LENGTH=427	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
KOG4287	KOG	Pectin acetylesterase and similar proteins	JGI		ISS
PTHR21562	Panther	NOTUM-RELATED	JGI		ISS
PTHR21562:SF1	Panther	PECTIN ACETYLESTERASE	JGI		ISS
PF03283	PFAM	Pectinacetylesterase	JGI		ISS
UniRef100_G7L4F5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Notum-like protein n=1 Tax=Medicago truncatula RepID=G7L4F5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E10A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E10A related cluster n=1 Tax=unknown RepID=UPI000233E10A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g39570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g39570

Paralog	Evidence	Comments
Glyma07g15737	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g39570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g179800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g39570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g39570

Limit To All Plant Sequences

>Glyma18g39570.2   sequence type=transcript   gene model=Glyma18g39570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCAAATCAAACTAGAATAGGAAACAAAATAATCTAGCATTAGATTTAGAGCACATTGAGCACGTTGGACAACAAATAAAACTAAACATCTTCATTGCGTTGACTCCAACTACTTGAACTCACTCCTGCAGTGTCCTTCTTCAATCCCATTCATTCATTCTCCCCCGACAACAACGCCATGCCTTCATGGTCGTCTTCTTCTTCCGCTCTAACCGCTCCCAATTTGCGTCTTCGCACTCTCAGAATTTGGTCCTCCAAGGACTATGCAATCGCCGCATTCATTTTCCTCATTCTCTTCTCTCTCCTTCTCTTCTCCCACTTGGATTCCCGTTACGATTCCCAGCCCCATCACTCCAAGCTCGTTCCGTTAACCCTCCTCCGCAACGCCAACCAAACGCGCGCGCTTTGCTTGGACGGGAGCGCTCCCGGTTACCATTTCCAAAGCGGGTTCGGATCCGGATCCCGCAATTGGCTGATCCACATTGAGGGAGGAGGGTGGTGCAATTCGATACCTTCTTGCTACCAGCGAAAATTCACTCATTTGGGGTCTTCCGATCATATGGAGAAGCTTATTCCTTTTTCAGGAATTTTGAGCTCTGACCCTGCTCAGAACCCTGATTTCTTTAACTGGAACAAGGTGAAGATACGTTATTGTGACGGTGCATCTTTTGCGGGTCATCCAGAGAGTGAGAGAGGAAGTGGGTTGTTCTTCAGAGGCCAGGTCATATGGGAAGCTATTATGGATGAACTCTTATCAACTGGCCTGTCTAATGCAAAGCAGGCTTTGCTTTCAGGATGCTCTGCTGGAGGGTTGGCAACTCTTATACACTGTGATAGTTTCCGACAAGTACTTCCAAAGGAAGCAACTGTCAAGTGTCTTGCTGATGCAGGCTTCTTCCTAGATGAGAAGGATATTAGTGGAAACAGTACAATGAGATCTTTCTATCATGATGTTGCCCAGCTTCAGGGTCTTGCAAAAAGTTTGCACAAAGATTGCATTGCTAAAATGGAACCATCTAAGTGTCTCTTTCCATCAGAAATTGCTAAAAACATAAAGACTCCACTGTTCCTTGTTCATCCAGCTTATGATTTCTGGCAGATACGCAATATTTTGGTGCCTCAAGGATCAGATCCTGATGGTCACTGGCAAAGGTGCAGACTGGACATTCGCAGTTGTAATGCTAATATGATTGATAAACTTGACAGTTACCGTGGCTCTTTGCTGAAGGCTGTGAATGAATTCCAACAACGAAAGGAGATTGGAATGTTTATAGATTCATGCTTCGTCCATTGCCAGACTGAGATGGAAGTGACGTGGCATTCACCCAACTCTCCTAAAATAAATGATAAGACAATTGCGGAATCTGTTGGTGATTGGTACTTTGACCGAGAAGCGGTAAAGCGCATTGACTGCTCTTCTTTTTCGTGCAACCCCACTTGCCACAACATGGATTTCACCTGAATATAAAATAAAGCTATGAGCCCCATTTTTTATTGCAACTTTTATCCCGGATCTTGGTTGCTTGAAGTTCATGAAGGAATATCCTCATTTATATCCGTTACGTGAATTTGGCTTCAATTGATTTAGAGTTAGAGAATATGCTGGGGAGTTCATCTTATTCACTTGTATGATATGGGTTCTACAGTCTATAGATTATTAAGCCATGCAGCATGTGTCCCCTTGATCAAGTGATTCAATTGTTATATAAATCAATTGTGTAATTGATTTGTTAGTTTCTTCTTAACTTTGTAATTTTTTTATGGATCCCTAATCCAGCACATTAGATTTTTGTGAATTACAAATTTATTATATTGATGCTCTATTAGCAACTCCAAAATCTCCGAATAAATGCAACCGTAATGAAAAGGGTATGTTGTGCCAGTAGTTTTCTTTCAATAAAAAATATTGGCCCCCTTTTCTTAT

Coding sequences of Glyma18g39570

Limit To All Plant Sequences

>Glyma18g39570.1   sequence type=CDS   gene model=Glyma18g39570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAGCTTATTCCTTTTTCAGGAATTTTGAGCTCTGACCCTGCTCAGAACCCTGATTTCTTTAACTGGAACAAGGTGAAGATACGTTATTGTGACGGTGCATCTTTTGCGGGTCATCCAGAGAGTGAGAGAGGAAGTGGGTTGTTCTTCAGAGGCCAGGTCATATGGGAAGCTATTATGGATGAACTCTTATCAACTGGCCTGTCTAATGCAAAGCAGGCTTTGCTTTCAGGATGCTCTGCTGGAGGGTTGGCAACTCTTATACACTGTGATAGTTTCCGACAAGTACTTCCAAAGGAAGCAACTGTCAAGTGTCTTGCTGATGCAGGCTTCTTCCTAGATGAGAAGGATATTAGTGGAAACAGTACAATGAGATCTTTCTATCATGATGTTGCCCAGCTTCAGGGTCTTGCAAAAAGTTTGCACAAAGATTGCATTGCTAAAATGGAACCATCTAAGTGTCTCTTTCCATCAGAAATTGCTAAAAACATAAAGACTCCACTGTTCCTTGTTCATCCAGCTTATGATTTCTGGCAGATACGCAATATTTTGGTGCCTCAAGGATCAGATCCTGATGGTCACTGGCAAAGGTGCAGACTGGACATTCGCAGTTGTAATGCTAATATGATTGATAAACTTGACAGTTACCGTGGCTCTTTGCTGAAGGCTGTGAATGAATTCCAACAACGAAAGGAGATTGGAATGTTTATAGATTCATGCTTCGTCCATTGCCAGACTGAGATGGAAGTGACGTGGCATTCACCCAACTCTCCTAAAATAAATGATAAGACAATTGCGGAATCTGTTGGTGATTGGTACTTTGACCGAGAAGCGGTAAAGCGCATTGACTGCTCTTCTTTTTCGTGCAACCCCACTTGCCACAACATGGATTTCACCTGA

>Glyma18g39570.2   sequence type=CDS   gene model=Glyma18g39570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTTCATGGTCGTCTTCTTCTTCCGCTCTAACCGCTCCCAATTTGCGTCTTCGCACTCTCAGAATTTGGTCCTCCAAGGACTATGCAATCGCCGCATTCATTTTCCTCATTCTCTTCTCTCTCCTTCTCTTCTCCCACTTGGATTCCCGTTACGATTCCCAGCCCCATCACTCCAAGCTCGTTCCGTTAACCCTCCTCCGCAACGCCAACCAAACGCGCGCGCTTTGCTTGGACGGGAGCGCTCCCGGTTACCATTTCCAAAGCGGGTTCGGATCCGGATCCCGCAATTGGCTGATCCACATTGAGGGAGGAGGGTGGTGCAATTCGATACCTTCTTGCTACCAGCGAAAATTCACTCATTTGGGGTCTTCCGATCATATGGAGAAGCTTATTCCTTTTTCAGGAATTTTGAGCTCTGACCCTGCTCAGAACCCTGATTTCTTTAACTGGAACAAGGTGAAGATACGTTATTGTGACGGTGCATCTTTTGCGGGTCATCCAGAGAGTGAGAGAGGAAGTGGGTTGTTCTTCAGAGGCCAGGTCATATGGGAAGCTATTATGGATGAACTCTTATCAACTGGCCTGTCTAATGCAAAGCAGGCTTTGCTTTCAGGATGCTCTGCTGGAGGGTTGGCAACTCTTATACACTGTGATAGTTTCCGACAAGTACTTCCAAAGGAAGCAACTGTCAAGTGTCTTGCTGATGCAGGCTTCTTCCTAGATGAGAAGGATATTAGTGGAAACAGTACAATGAGATCTTTCTATCATGATGTTGCCCAGCTTCAGGGTCTTGCAAAAAGTTTGCACAAAGATTGCATTGCTAAAATGGAACCATCTAAGTGTCTCTTTCCATCAGAAATTGCTAAAAACATAAAGACTCCACTGTTCCTTGTTCATCCAGCTTATGATTTCTGGCAGATACGCAATATTTTGGTGCCTCAAGGATCAGATCCTGATGGTCACTGGCAAAGGTGCAGACTGGACATTCGCAGTTGTAATGCTAATATGATTGATAAACTTGACAGTTACCGTGGCTCTTTGCTGAAGGCTGTGAATGAATTCCAACAACGAAAGGAGATTGGAATGTTTATAGATTCATGCTTCGTCCATTGCCAGACTGAGATGGAAGTGACGTGGCATTCACCCAACTCTCCTAAAATAAATGATAAGACAATTGCGGAATCTGTTGGTGATTGGTACTTTGACCGAGAAGCGGTAAAGCGCATTGACTGCTCTTCTTTTTCGTGCAACCCCACTTGCCACAACATGGATTTCACCTGA

Predicted protein sequences of Glyma18g39570

Limit To All Plant Sequences

>Glyma18g39570.1   sequence type=predicted peptide   gene model=Glyma18g39570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKLIPFSGILSSDPAQNPDFFNWNKVKIRYCDGASFAGHPESERGSGLFFRGQVIWEAIMDELLSTGLSNAKQALLSGCSAGGLATLIHCDSFRQVLPKEATVKCLADAGFFLDEKDISGNSTMRSFYHDVAQLQGLAKSLHKDCIAKMEPSKCLFPSEIAKNIKTPLFLVHPAYDFWQIRNILVPQGSDPDGHWQRCRLDIRSCNANMIDKLDSYRGSLLKAVNEFQQRKEIGMFIDSCFVHCQTEMEVTWHSPNSPKINDKTIAESVGDWYFDREAVKRIDCSSFSCNPTCHNMDFT*

>Glyma18g39570.2   sequence type=predicted peptide   gene model=Glyma18g39570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSWSSSSSALTAPNLRLRTLRIWSSKDYAIAAFIFLILFSLLLFSHLDSRYDSQPHHSKLVPLTLLRNANQTRALCLDGSAPGYHFQSGFGSGSRNWLIHIEGGGWCNSIPSCYQRKFTHLGSSDHMEKLIPFSGILSSDPAQNPDFFNWNKVKIRYCDGASFAGHPESERGSGLFFRGQVIWEAIMDELLSTGLSNAKQALLSGCSAGGLATLIHCDSFRQVLPKEATVKCLADAGFFLDEKDISGNSTMRSFYHDVAQLQGLAKSLHKDCIAKMEPSKCLFPSEIAKNIKTPLFLVHPAYDFWQIRNILVPQGSDPDGHWQRCRLDIRSCNANMIDKLDSYRGSLLKAVNEFQQRKEIGMFIDSCFVHCQTEMEVTWHSPNSPKINDKTIAESVGDWYFDREAVKRIDCSSFSCNPTCHNMDFT*

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